Important updates to internal function used by make.simmap
pre .operator, pre .paren { color: rgb(104, 118, 135) } pre .literal { color: #990073 } pre .number { color: #099; } pre .comment { color: #998; font-style: italic } pre .keyword { color: #900;...
View ArticleImperceptible update to rerootingMethod for ancestral state reconstruction
pre .operator, pre .paren { color: rgb(104, 118, 135) } pre .literal { color: #990073 } pre .number { color: #099; } pre .comment { color: #998; font-style: italic } pre .keyword { color: #900;...
View ArticleAdditional method for fitPagel to fit Pagel's (1994) model of correlated...
pre .operator, pre .paren { color: rgb(104, 118, 135) } pre .literal { color: #990073 } pre .number { color: #099; } pre .comment { color: #998; font-style: italic } pre .keyword { color: #900;...
View ArticleUpdate to rateshift method that results in much better optimization for...
pre .operator, pre .paren { color: rgb(104, 118, 135) } pre .literal { color: #990073 } pre .number { color: #099; } pre .comment { color: #998; font-style: italic } pre .keyword { color: #900;...
View ArticleThe difference between different methods for fitting the Mk model in R: It's...
pre .operator, pre .paren { color: rgb(104, 118, 135) } pre .literal { color: #990073 } pre .number { color: #099; } pre .comment { color: #998; font-style: italic } pre .keyword { color: #900;...
View ArticleModifications to brownieREML & new REML version of rateshift
pre .operator, pre .paren { color: rgb(104, 118, 135) } pre .literal { color: #990073 } pre .number { color: #099; } pre .comment { color: #998; font-style: italic } pre .keyword { color: #900;...
View ArticleNew version of phytools (0.5-00) submitted to CRAN
pre .operator, pre .paren { color: rgb(104, 118, 135) } pre .literal { color: #990073 } pre .number { color: #099; } pre .comment { color: #998; font-style: italic } pre .keyword { color: #900;...
View ArticleNew phytools version on CRAN; bug fix in make.simmap(...,Q="mcmc")
pre .operator, pre .paren { color: rgb(104, 118, 135) } pre .literal { color: #990073 } pre .number { color: #099; } pre .comment { color: #998; font-style: italic } pre .keyword { color: #900;...
View ArticleNew, reasonably fast method to compute the patristic distance between a pair...
pre .operator, pre .paren { color: rgb(104, 118, 135) } pre .literal { color: #990073 } pre .number { color: #099; } pre .comment { color: #998; font-style: italic } pre .keyword { color: #900;...
View ArticleA few minor fixes & updates
body, td { font-family: sans-serif; font-size: 13px; } body { max-width: 800px; margin: auto; padding: 1em; line-height: 20px; } tt, code, pre { font-family: 'DejaVu Sans Mono', 'Droid Sans Mono',...
View ArticleScale bar for cophylo plotting
pre .operator, pre .paren { color: rgb(104, 118, 135) } pre .literal { color: #990073 } pre .number { color: #099; } pre .comment { color: #998; font-style: italic } pre .keyword { color: #900;...
View ArticleRe-write of internally used function phyloDesign
pre .operator, pre .paren { color: rgb(104, 118, 135) } pre .literal { color: #990073 } pre .number { color: #099; } pre .comment { color: #998; font-style: italic } pre .keyword { color: #900;...
View ArticleSmall update to the small phytools function to fix malconformed trees
pre .operator, pre .paren { color: rgb(104, 118, 135) } pre .literal { color: #990073 } pre .number { color: #099; } pre .comment { color: #998; font-style: italic } pre .keyword { color: #900;...
View ArticleCo-phylogenetic plot for trees with no edge lengths
pre .operator, pre .paren { color: rgb(104, 118, 135) } pre .literal { color: #990073 } pre .number { color: #099; } pre .comment { color: #998; font-style: italic } pre .keyword { color: #900;...
View ArticleNode, edge, & tip labels for plotted cophylo objects
pre .operator, pre .paren { color: rgb(104, 118, 135) } pre .literal { color: #990073 } pre .number { color: #099; } pre .comment { color: #998; font-style: italic } pre .keyword { color: #900;...
View ArticleNew features in phytools function plotTree.wBars
pre .operator, pre .paren { color: rgb(104, 118, 135) } pre .literal { color: #990073 } pre .number { color: #099; } pre .comment { color: #998; font-style: italic } pre .keyword { color: #900;...
View ArticleSimulating a species tree from a genus tree in which the genera arise...
pre .operator, pre .paren { color: rgb(104, 118, 135) } pre .literal { color: #990073 } pre .number { color: #099; } pre .comment { color: #998; font-style: italic } pre .keyword { color: #900;...
View ArticleInteractive mode for bind.tip & reroot
pre .operator, pre .paren { color: rgb(104, 118, 135) } pre .literal { color: #990073 } pre .number { color: #099; } pre .comment { color: #998; font-style: italic } pre .keyword { color: #900;...
View ArticleStochastic mapping with an ordered character
pre .operator, pre .paren { color: rgb(104, 118, 135) } pre .literal { color: #990073 } pre .number { color: #099; } pre .comment { color: #998; font-style: italic } pre .keyword { color: #900;...
View Articlephylo.to.map with right-facing trees; preliminary t-shirt design for Valdivia...
pre .operator, pre .paren { color: rgb(104, 118, 135) } pre .literal { color: #990073 } pre .number { color: #099; } pre .comment { color: #998; font-style: italic } pre .keyword { color: #900;...
View Article