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Important updates to internal function used by make.simmap

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Imperceptible update to rerootingMethod for ancestral state reconstruction

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Additional method for fitPagel to fit Pagel's (1994) model of correlated...

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Update to rateshift method that results in much better optimization for...

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The difference between different methods for fitting the Mk model in R: It's...

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Modifications to brownieREML & new REML version of rateshift

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New version of phytools (0.5-00) submitted to CRAN

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New phytools version on CRAN; bug fix in make.simmap(...,Q="mcmc")

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New, reasonably fast method to compute the patristic distance between a pair...

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A few minor fixes & updates

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Scale bar for cophylo plotting

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Re-write of internally used function phyloDesign

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Small update to the small phytools function to fix malconformed trees

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Co-phylogenetic plot for trees with no edge lengths

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Node, edge, & tip labels for plotted cophylo objects

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New features in phytools function plotTree.wBars

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Simulating a species tree from a genus tree in which the genera arise...

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Interactive mode for bind.tip & reroot

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Stochastic mapping with an ordered character

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phylo.to.map with right-facing trees; preliminary t-shirt design for Valdivia...

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