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Mapping the value of a continuous trait at only the nodes of a plotted...
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Adding grids to the nodes of a plotted tree
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Update to fitPagel binary trait evolution model plotting method to facilitate...
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Simple demonstration of Felsenstein's pruning algorithm in R to compute the...
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Showing missing values as white lines on a "contMap" style plot
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Custom function for marginal ancestral state reconstruction using phytools
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Generic simmap method for "simmap" object class. (Wait... what?)
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Generic method for marginal ancestral state estimation in phytools
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Marginal ancestral state reconstruction under a hidden-rates model using new...
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Simplified workflow for marginal ancestral state reconstruction using phytools
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Model-averaging in marginal ancestral state reconstruction using phytools
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Ancestral character estimation under the hidden-rates model using phytools
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Slightly faster calculation of the likelihood in fitMk for fitting the...
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Parallelizing multiple iterations of ML optimization (of the Mk or other...
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Fitting a standard Mk trait evolution model using fitHRM in phytool
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Some details on making a figure (preserving trailing zeros, multi-panel...
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Log-likelihoods computed by ape::ace and phytools::fitMk differ by a constant...
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The Fitch algorithm for computing the parsimony score of a character, in R
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ANSI text graphic style plotted phylogeny in R
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ansi_phylo plotter generalized to arbitrary text characters
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