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More on plotting multiple quantitative traits at the tips of the tree using bars

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Sigmoid phylograms for "phylo", "simmap", and "contMap" object classes

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Two ways to flip our x-axis on a lineage-through-time plot

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sigmoidPhylogram now in development version of phytools. (That's it.)

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Optional function arguments (and their effects) in phytools::sigmoidPhylogram

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Computing the slope & 95% CIs around the slope from a phylogenetic ANCOVA

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Improved optimization in evolvcv.lite for fitted nested models for...

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anova for "fitPagel" object class in phytools

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An anova method for the "fit.bd" object class (and how to write your own)

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On the behavior of threshBayes for estimating the evolutionary correlation...

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Left/up/down facing trees and tidy tip layout in phytools sigmoidPhylogram

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Plotting a fitted Mk model coloring the transition types by rate

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Plotting a fitted Mk model with different arrow widths for different...

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More updates to visualization of fitted Mk models and new anova method for...

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Stochastic character mapping in phytools with a fixed value of the Q...

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Parallelized multirateBM for variable-rate Brownian evolution model

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Updated default orientation of plotted Q matrix, for discrete character...

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On the expected distribution of the residual error from phylogenetic...

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Fitting an Mk model to discrete character data when the states at some (or...

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Parallelized optimization now an option in fitMk, plus the advantage of...

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