Quantcast
Channel: Phylogenetic Tools for Comparative Biology
Browsing all 802 articles
Browse latest View live

Image may be NSFW.
Clik here to view.

Second video demo of tree.drawer in phytools

pre .operator, pre .paren { color: rgb(104, 118, 135) } pre .literal { color: #990073 } pre .number { color: #099; } pre .comment { color: #998; font-style: italic } pre .keyword { color: #900;...

View Article


Image may be NSFW.
Clik here to view.

Testing whether the rate of evolution of a continuous trait is different in...

pre .operator, pre .paren { color: rgb(104, 118, 135) } pre .literal { color: #990073 } pre .number { color: #099; } pre .comment { color: #998; font-style: italic } pre .keyword { color: #900;...

View Article


Image may be NSFW.
Clik here to view.

Type I error & power of method to compare rates among trees

pre .operator, pre .paren { color: rgb(104, 118, 135) } pre .literal { color: #990073 } pre .number { color: #099; } pre .comment { color: #998; font-style: italic } pre .keyword { color: #900;...

View Article

Image may be NSFW.
Clik here to view.

More user control of optimization in ratebytree

pre .operator, pre .paren { color: rgb(104, 118, 135) } pre .literal { color: #990073 } pre .number { color: #099; } pre .comment { color: #998; font-style: italic } pre .keyword { color: #900;...

View Article

Image may be NSFW.
Clik here to view.

New package for creating phylogenies 'free-hand' in R: physketch

pre .operator, pre .paren { color: rgb(104, 118, 135) } pre .literal { color: #990073 } pre .number { color: #099; } pre .comment { color: #998; font-style: italic } pre .keyword { color: #900;...

View Article


Image may be NSFW.
Clik here to view.

Additional function for interactive drawing of a cladogram or ultrametric...

pre .operator, pre .paren { color: rgb(104, 118, 135) } pre .literal { color: #990073 } pre .number { color: #099; } pre .comment { color: #998; font-style: italic } pre .keyword { color: #900;...

View Article

Image may be NSFW.
Clik here to view.

Plotting up- & down-facing phylograms in phytools::plotSimmap

pre .operator, pre .paren { color: rgb(104, 118, 135) } pre .literal { color: #990073 } pre .number { color: #099; } pre .comment { color: #998; font-style: italic } pre .keyword { color: #900;...

View Article

Image may be NSFW.
Clik here to view.

Plotting up- and down-facing "contMap"&"densityMap" trees

pre .operator, pre .paren { color: rgb(104, 118, 135) } pre .literal { color: #990073 } pre .number { color: #099; } pre .comment { color: #998; font-style: italic } pre .keyword { color: #900;...

View Article


Image may be NSFW.
Clik here to view.

Interactive node labeling using phytools

pre .operator, pre .paren { color: rgb(104, 118, 135) } pre .literal { color: #990073 } pre .number { color: #099; } pre .comment { color: #998; font-style: italic } pre .keyword { color: #900;...

View Article


Image may be NSFW.
Clik here to view.

More on labeling nodes using ape::nodelabels & phytools

pre .operator, pre .paren { color: rgb(104, 118, 135) } pre .literal { color: #990073 } pre .number { color: #099; } pre .comment { color: #998; font-style: italic } pre .keyword { color: #900;...

View Article

Image may be NSFW.
Clik here to view.

Testing hypotheses about Pagel's λ in phyl.RMA

pre .operator, pre .paren { color: rgb(104, 118, 135) } pre .literal { color: #990073 } pre .number { color: #099; } pre .comment { color: #998; font-style: italic } pre .keyword { color: #900;...

View Article

Image may be NSFW.
Clik here to view.

Adding colorful error bars to internal node values using phytools::contMap

pre .operator, pre .paren { color: rgb(104, 118, 135) } pre .literal { color: #990073 } pre .number { color: #099; } pre .comment { color: #998; font-style: italic } pre .keyword { color: #900;...

View Article

Image may be NSFW.
Clik here to view.

More on adding error bars to a "contMap" plot

pre .operator, pre .paren { color: rgb(104, 118, 135) } pre .literal { color: #990073 } pre .number { color: #099; } pre .comment { color: #998; font-style: italic } pre .keyword { color: #900;...

View Article


Image may be NSFW.
Clik here to view.

Function to add error bars to a contMap plot

pre .operator, pre .paren { color: rgb(104, 118, 135) } pre .literal { color: #990073 } pre .number { color: #099; } pre .comment { color: #998; font-style: italic } pre .keyword { color: #900;...

View Article

Image may be NSFW.
Clik here to view.

Error bars on divergence times on a phylogeny plotted in R

pre .operator, pre .paren { color: rgb(104, 118, 135) } pre .literal { color: #990073 } pre .number { color: #099; } pre .comment { color: #998; font-style: italic } pre .keyword { color: #900;...

View Article


Image may be NSFW.
Clik here to view.

Function to plot a tree with error bars on divergence dates in R

pre .operator, pre .paren { color: rgb(104, 118, 135) } pre .literal { color: #990073 } pre .number { color: #099; } pre .comment { color: #998; font-style: italic } pre .keyword { color: #900;...

View Article

More on PGLS with error in y

pre .operator, pre .paren { color: rgb(104, 118, 135) } pre .literal { color: #990073 } pre .number { color: #099; } pre .comment { color: #998; font-style: italic } pre .keyword { color: #900;...

View Article


Image may be NSFW.
Clik here to view.

Statistical behavior of PGLS taking account sampling error of y

pre .operator, pre .paren { color: rgb(104, 118, 135) } pre .literal { color: #990073 } pre .number { color: #099; } pre .comment { color: #998; font-style: italic } pre .keyword { color: #900;...

View Article

Image may be NSFW.
Clik here to view.

Bug fixes for non-flat prior on the root node in make.simmap (and for MCMC...

pre .operator, pre .paren { color: rgb(104, 118, 135) } pre .literal { color: #990073 } pre .number { color: #099; } pre .comment { color: #998; font-style: italic } pre .keyword { color: #900;...

View Article

Image may be NSFW.
Clik here to view.

Difference equation approximation OU simulation function

pre .operator, pre .paren { color: rgb(104, 118, 135) } pre .literal { color: #990073 } pre .number { color: #099; } pre .comment { color: #998; font-style: italic } pre .keyword { color: #900;...

View Article
Browsing all 802 articles
Browse latest View live