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Parameter estimation of discrete state-dependent multi-rate continuous...
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Running multiple optimization iterations & other things for phytools::fitmultiBM
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Obtaining a time-calibrated ultrametric tree using chronos from the ape package
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An animated GIF of Brownian evolution on a tree using phytools
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View ArticleBounded Brownian motion & the most important phylogenetic comparative methods...
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Fitting a Pagel '94 model with hidden-rates using phytools
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Fitting a multi-state threshold model using fitThresh in phytools when some...
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Ancestral state estimates from the multi-state threshold model fit using the...
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Fitting a multi-rate discrete state dependent continuous character evolution...
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Plotted rateshift model with custom color gradient
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Identifiability of the rateshift model in phytools (and some updates to help...
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A general clade box function for phytools
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Minor improvements to fitPagel for fitting a correlated binary trait...
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A simple custom R contour plotter
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A "polymorphic" trait evolution model with a null or absent condition
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A minimum sample size for multirateBM in phytools
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Projecting a continuous character onto the branches of multiple trees using a...
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A new semi-threshold trait evolution model for phytools
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A bounded continuous character evolution model with absorbing boundaries for...
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Parameter estimation under the bounded Brownian model with absorbing bounds
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