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Decommissioning rerootingMethod (and a comparison of methods for marginal...

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Control dot border colors in phytools dotTree

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Trick to use multiple font styles in a single tip label of a plotted phylogeny

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Coloring nodes by bootstrap or Bayesian posterior support values

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Updates to phytools function phylo.to.map for projecting a phylogeny onto a...

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Visualizing lineage accumulation on the tree by clade (or mapped regime)

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Computing an HPD interval on the evolutionary correlation from threshBayes in...

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Plotting trick to connect aligned labels to the tips of a graphed...

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Marginal ancestral state reconstruction using ancr in phytools 2.0

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Creating custom phylogeny plotting styles using phytools in R

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Workflow for phylogenetic canonical correlation analysis using phytools phyl.cca

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Joint reconstruction gives a parsimony ancestral state reconstruction if the...

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Graphing a "simmap" phylogeny with different line types for different mapped...

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A variable rate discrete trait evolution model with Γ-distributed rates...

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Ancestral state reconstruction with Γ-distributed rate heterogeneity...

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Reconstructing ancestral states of a discrete character under Γ rate...

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Plotting facing "arc" or "fan" style trees with phytools

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Follow-up on plotting facing "arc" or "fan" style trees

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Marginal likelihoods & plotting method for Γ-distributed rate...

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Explainer of Γ rate heterogeneity model for phenotypic traits in phytools

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