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New object class and methods for Q transition matrix of discrete character...
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Fitzjohn et al. (2009) root prior in fitMk and some of the other functions...
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Projecting a continuous trait onto the branches of a tree using variable edge...
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Customizing a plotted Mk discrete character evolution model
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Graphing a fitted Mk model with different weight arrows for different rates
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Co-phylogenetic plotting with different color linking lines
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On matching nodes between trees using matchNodes
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Overplotting a tree of sampled species on a fully-sampled tree
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Fitting a multi-rate, multi-correlation model to quantitative character data...
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New variable rate ML method for quantitative traits in phytools
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Variable-rate Brownian motion evolution on a phylogeny: a penalized...
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Updated plotting method for variable-rate penalized likelihood model in phytools
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More updates to multi-rate Brownian evolution model with examples from...
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Computing (& plotting) the implied changes from ancestral state...
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Fitting a single Mk discrete character evolution model to a set of different...
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Update to plotting method for the rates among states under a fitted Mk model...
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New example for multi-rate Brownian motion evolution method
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Old & new function to read NEXUS tree file with certain annotation
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Control subplot settings in plotTree.barplot
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Constraining the root state during stochastic character mapping in phytools
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